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I may be saying this wrong but I am noticing two types of plugins script files and database files. What if any is the difference between the two, is it a question of function? Thank you.
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No, there's just one type of plugin script. The ones that end in .AstroScript. These are written in VBScript and can access Astro's internal functions and data.
But since Astro files are SQLite database files, its possible to write programs/scripts in other languages and directly manipulate the database outside of Astro.